Pumpkin zucchini muffins are a healthy breakfast or snack recipe great for feeding hungry kids! Moist, fluffy, and light, this is an easy recipe to double and freeze a batch for a quick snack. Add in some chocolate chips for a little bit of sweetness with the perfect pumpkin-zucchini combo!
Want this recipe sent to you?
I'll email this post to you, so you can come back to it later! (Check your spam if you have Gmail!)
This post may contain paid links. If you click on a link and make a purchase, I may receive a small commission at no extra cost to you. For more information, please read my disclaimer.
Jump to:
It's the time of year for pumpkin recipes and zucchini recipes! If you're still holding on to summer (like me!) but are also really excited about fall, pumpkin zucchini muffins will help!
This recipe is even better than the original because it has no refined sugar, is dairy-free and gluten-free, and is easy to make vegan!
I've been using zucchini to make almond flour zucchini muffins, zucchini lasagna rolls, air fryer zucchini sticks, and healthy zucchini muffins. These gluten-free zucchini pumpkin muffins combine two of my favorite late summer/early fall flavors, zucchini and pumpkin!
Why This Recipe Works
- Fluffy and moist muffins - just like these lemon protein blueberry muffins.
- Family-friendly - this recipe is a great one to get hidden veggies into your picky eaters!
- The perfect breakfast or an easy snack for busy mornings or after school. (Protein baked oatmeal and pumpkin walnut streusel bread is also a huge favorite in our house!)
- Fall flavors are at their peak! Between pumpkin spice and fresh zucchini, this muffin gives all of the flavor fall has to offer - just like these protein pumpkin muffins.
- Easy way to use up extra zucchini!
Ingredients for This Recipe
Here are the ingredients you need to make this recipe. Reference the recipe card at the bottom for exact measurements and the notes below for substitution ideas.
- All-purpose flour - use Bob's Red Mill or King Arthur Gluten Free 1-1 baking flour if you are gluten-free. You may also consider using half-wheat flour if you want even more whole grains.
- Shredded zucchini - I peel and shred on the smallest opening on my grater (great for picky kids!) I also squeeze out all of the extra moisture with a paper towel.
- Raw maple syrup - you can also sweeten your refined sugar-free muffins with coconut sugar or raw honey. Brown sugar also works.
- Pumpkin - I opt for canned pumpkin puree. Fresh pumpkin puree also works.
- Egg - replace with flax eggs or applesauce to make it vegan and egg free.
- Mix-ins - I chose chocolate chips - Craisins, golden raisins, walnuts, pecans, apple chips or pumpkin seeds are also delicious options.
How to Make This Recipe
Below are step-by-step instructions for how to cook this recipe with the best results. The recipe card at the bottom shows the exact cooking time and temperatures.
Step 1
Prepare your muffin tin by lining it with muffin cups or silicone liners and spraying them with coconut oil or cooking spray. This will help you ensure that the muffins do not stick to the liners.
Preheat the oven to 425F.
In a large bowl, mix together the dry ingredients including flour, baking soda, baking powder, salt, and pumpkin spice.
Step 2
Grate zucchini using a box grater. Be sure to wring out all of the excess moisture using a paper towel.
This will help to make sure the muffins do not have too much moisture.
In a separate bowl combine the wet ingredients including pumpkin, vanilla extract, melted coconut oil, grated zucchini, maple syrup, and eggs.
Step 3
Combine wet and dry ingredients and fold in any mix-ins. Use a standard cookie scoop to spoon out 12 muffins.
Step 4
Bake for 5 minutes at 425F then reduce heat to 350F and bake for an additional 10-15 minutes or until a toothpick inserted in the center comes out clean.
How to Store Pumpkin Zucchini Muffins
- Allow your muffins to cool completely on a wire rack before packaging or freezing.
- Storage: Store muffins in an airtight container or wrap tightly in plastic wrap for up to 2 days at room temperature or up to 5 days in the fridge.
- Freeze: You can freeze these muffins in a freezer-safe container or a Ziploc bag for up to 3 months.
Expert Tips
- Measure out the zucchini before wringing out the excess moisture.
- Do not over-mix the batter.
- To avoid muffins sticking: use silicone muffin liners or spray your liners with coconut oil spray to easily remove after baking.
- A double muffin pan is helpful when you want to bake muffins in bulk and freeze.
- One can of canned pumpkin makes about two dozen of these pumpkin zucchini muffins.
- Use a standard-sized ice cream scoop and fill the muffin tin ¾ of the way up to evenly measure out 12 muffins without overfilling and overflowing the tin.
- Heat up muffins for a few seconds in the microwave.
- Make this recipe in one bowl by mixing together wet ingredients then dry in the same bowl.
FAQs
If you are looking to make a loaf of quick bread, check out my recipe for healthy zucchini bread with applesauce and substitute half of the zucchini for pumpkin.
No, peeling it is not necessary. However, if your family has texture issues you can easily peel it.
Use a box grater to grate the zucchini similar to a block of cheese. I generally shred on the smallest opening to avoid large chunks but you can also use the regular shredded size.
You also do not have to remove the seeds when grating.
Almond flour and all-purpose flour are not a one-to-one substitution. If you are looking to make a flourless paleo muffin with almond flour, check out this recipe for Almond Flour Banana Muffins. You can swap bananas for half zucchini, and half pumpkin to keep the flavors the same.
My favorite way to determine if they are done baking is to insert a toothpick into the center of the largest muffin. If the toothpick comes out clean they are done.
More Zucchini and Pumpkin Recipes!
If you've made this recipe, would you please leave a star rating and comment below on the recipe card? If you want more simple + delicious eats, please subscribe to my newsletter and follow along on Facebook, Pinterest, and Instagram for the latest updates.
Fluffy Pumpkin Zucchini Muffins (Gluten-free)
Equipment
- 12 silicone baking cups
- coconut oil spray
- box grater
Ingredients
Wet Ingredients
- 1 cup pumpkin puree
- ½ cup coconut oil melted and slightly cooled
- ½ cup maple syrup
- 2 large eggs beaten
- ¾ cup shredded zucchini about 1 medium zucchini
Dry Ingredients
- 1 cup gluten-free flour
- 1 tablespoon pumpkin spice
- 1 teaspoon baking soda
- ¼ teaspoon baking powder
- ¼ teaspoon sea salt
Other Ingredients
- ⅓ cup chocolate chips use Enjoy Life if dairy free
Instructions
- Preheat oven to 425 degrees.
- Lightly spray muffin liners with coconut oil and place into muffin tray.
- Combine dry ingredients and mix well.1 cup gluten-free flour, 1 tablespoon pumpkin spice, 1 teaspoon baking soda, ¼ teaspoon baking powder, ¼ teaspoon sea salt
- Separately, mix together the pumpkin, zucchini, coconut oil, maple syrup, and eggs until well incorporated.1 cup pumpkin puree, ½ cup coconut oil, ½ cup maple syrup, 2 large eggs, ¾ cup shredded zucchini, ⅓ cup chocolate chips
- Stir in chocolate chips. In parts, add in dry ingredients until just moistened.
- Using an ice cream scoop, fill muffin cups ¾ way full. Bake for 5 minutes then reduce the heat to 350 F and bake for an additional 15-20 minutes (depending on your pan and oven) until the center of the muffin is lightly browned and a toothpick comes out clean from the center.
Notes
- To avoid muffins sticking: use silicone liners or spray your liners with coconut oil spray to easily remove after baking.
- If your zucchini seems too moist, use a paper towel to wring out most of the moisture.
- Use a standard sized ice cream scoop and fill muffin tin ¾ of the way up to evenly measure out 12 muffins without overfilling and overflowing the tin.
- Make this recipe in one bowl by mixing together wet ingredients then dry in the same bowl.
- Allow your muffins to cool completely before packaging or freezing.
- Freeze: You can freeze these muffins in a freezer safe container for up to 3 months.
- Storage: Store muffins in an airtight container for up to 2 days on the counter or up to 5 days in the fridge.
- Heat up muffins for a few seconds in the microwave.
Want this recipe sent to you?
I'll email this post to you, so you can come back to it later! (Check your spam if you have Gmail!)
Sarah says
I make these with my almost 3 year old and he loves them! Toddler and Mama approved
Alexa says
Flavor was great. I had to use applesauce in place of the eggs (I was out) so the texture was a little mushy but not too bad. I also could’ve dried the zucchini a little more than I did. Either way, these were a hit with my 3 toddlers and I liked them too!
Rachel says
Delicious! Already had 2, whoops. Need to pace myself. Didn't have pumpkin spice but tasted great without it.
Lyndsey says
yum! It's hard not to want to eat the whole batch! Thank you for trying them Rachel and for the comment and rating!
Ashley huber says
These were amazing!!!
Lyndsey says
I'm so glad you liked them! Thank you for the review!